Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 25836
Gene Symbol: NIPBL
NIPBL
0.130 CausalMutation group CLINVAR
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.110 CausalMutation group CLINVAR Germline mutations in genes within the MAPK pathway cause cardio-facio-cutaneous syndrome. 16439621 2006
Entrez Id: 673
Gene Symbol: BRAF
BRAF
0.110 CausalMutation group CLINVAR Germline KRAS and BRAF mutations in cardio-facio-cutaneous syndrome. 16474404 2006
Entrez Id: 7038
Gene Symbol: TG
TG
0.100 CausalMutation group CLINVAR
Entrez Id: 5894
Gene Symbol: RAF1
RAF1
0.100 CausalMutation group CLINVAR Germline gain-of-function mutations in RAF1 cause Noonan syndrome. 17603482 2007
Entrez Id: 5894
Gene Symbol: RAF1
RAF1
0.100 CausalMutation group CLINVAR Gain-of-function RAF1 mutations cause Noonan and LEOPARD syndromes with hypertrophic cardiomyopathy. 17603483 2007
Entrez Id: 8242
Gene Symbol: KDM5C
KDM5C
0.600 AlteredExpression group BEFREE Interestingly, mutations in all four genes (KDM5C, ARX, ZNF711 and PHF8) are associated with X-linked NDDs comprising intellectual disability as a core feature. in vitro analysis of the KDM5C promoter revealed that ARX and ZNF711 function as antagonist transcription factors that activate KDM5C expression and compete for the recruitment of PHF8. 31691806 2019
Entrez Id: 4204
Gene Symbol: MECP2
MECP2
0.500 AlteredExpression group BEFREE Overall, 16p11.2 CNV was associated with altered expression of genes and networks that converge on multiple hypotheses of ASD pathogenesis, including synaptic function (e.g., NRXN1, NRXN3), chromatin modification (e.g., CHD8, EHMT1, MECP2), transcriptional regulation (e.g., TCF4, SATB2), and intellectual disability (e.g., FMR1, CEP290). 24906019 2014
Entrez Id: 4204
Gene Symbol: MECP2
MECP2
0.500 AlteredExpression group BEFREE Maintenance of an appropriate level of MeCP2 appears integral to the function of healthy neurons as patients with increased levels of MeCP2, owing to duplication of the Xq28 region encompassing the MECP2 locus, also present with intellectual disability and progressive neurologic symptoms. 26060191 2015
Entrez Id: 4204
Gene Symbol: MECP2
MECP2
0.500 AlteredExpression group BEFREE The need for tightly controlled MeCP2 levels in brain is strongly suggested by neurologically abnormal phenotypes of mouse models with mild overexpression and by mental retardation in human males with MECP2 duplication. 16613900 2006
Entrez Id: 627
Gene Symbol: BDNF
BDNF
0.500 AlteredExpression group BEFREE We further found that significant decreases in the BDNF-protein level in the medial prefrontal cortex of ATR-X model mice were recovered with treatment of SA4503. 30231518 2018
Entrez Id: 85358
Gene Symbol: SHANK3
SHANK3
0.500 AlteredExpression group BEFREE Deletions and point mutations in SHANK3 cause Phelan-McDermid Syndrome (PMS), and have also been implicated in autism spectrum disorder (ASD) and intellectual disabilities, leading to the hypothesis that reduced SHANK3 expression impairs basic brain functions that are important for social communication and cognition. 27189882 2017
Entrez Id: 627
Gene Symbol: BDNF
BDNF
0.500 AlteredExpression group BEFREE Elevated BDNF levels and lower tryptophan and KA levels were characteristics of both childhood autism and intellectual disability disorder, whilst elevated tryptophan and lower 5-HT synthesis were hallmarks of Asperger syndrome. 30033880 2018
Entrez Id: 627
Gene Symbol: BDNF
BDNF
0.500 AlteredExpression group BEFREE BDNF serum levels were measured in 45 ASD children without intellectual disability (ID) and allergies, age 30-42 months and age-matched normal controls. 29532458 2018
Entrez Id: 23040
Gene Symbol: MYT1L
MYT1L
0.470 AlteredExpression group BEFREE Myt1L (myelin transcription factor 1-like), mainly expressed in neurons, has been associated with intellectual disability, schizophrenia, and depression. 29397565 2018
Entrez Id: 1654
Gene Symbol: DDX3X
DDX3X
0.460 AlteredExpression group BEFREE Mutations in human DDX3X and deregulation of its expression are linked to tumorigenesis and intellectual disability. 29037760 2017
Entrez Id: 5879
Gene Symbol: RAC1
RAC1
0.450 AlteredExpression group BEFREE Misregulated RhoA, Rac1/Rac3 and cdc42 activity has been linked with intellectual disability (ID) and other neurodevelopmental conditions that comprise ID. 29925821 2018
Entrez Id: 1717
Gene Symbol: DHCR7
DHCR7
0.450 AlteredExpression group BEFREE The Smith-Lemli-Opitz (SLO) syndrome is a multiple congenital anomaly with mental retardation due to a decreased or lack of activity of 7-dehydrocholesterol reductase as a consequence of mutations of the DHCR7 gene. 19365639 2010
Entrez Id: 5879
Gene Symbol: RAC1
RAC1
0.450 AlteredExpression group BEFREE Non-syndromic mental retardation is not expressed in RAC1 gene polymorphisms. 18440141 2008
Entrez Id: 998
Gene Symbol: CDC42
CDC42
0.430 AlteredExpression group BEFREE Misregulated RhoA, Rac1/Rac3 and cdc42 activity has been linked with intellectual disability (ID) and other neurodevelopmental conditions that comprise ID. 29925821 2018
Entrez Id: 51132
Gene Symbol: RLIM
RLIM
0.430 AlteredExpression group BEFREE Our data thereby uncover a key function for RNF12 E3 ubiquitin ligase activity in stem cell and neural development and identify mechanisms by which this is disrupted in intellectual disability. 29742418 2018
Entrez Id: 9759
Gene Symbol: HDAC4
HDAC4
0.430 AlteredExpression group BEFREE We propose a core pathway of transcription regulators, including Hdac4, involved in chromatin condensation and transcriptional repression, and one of its targets, the transcription factor Twist1, as potential drivers of the ID and infantile spasms in patients with ARX polyalanine expansion mutations. 27798109 2016
Entrez Id: 23152
Gene Symbol: CIC
CIC
0.410 AlteredExpression group BEFREE Variants in CLCN4, which encodes the chloride/hydrogen ion exchanger CIC-4 prominently expressed in brain, were recently described to cause X-linked intellectual disability and epilepsy. 27550844 2018
Entrez Id: 6898
Gene Symbol: TAT
TAT
0.410 AlteredExpression group BEFREE Richner-Hanhart's syndrome (corneal dystrophies, palmoplantar keratoses, and mental retardation) is caused by high levels of L-tyrosine in the blood, probably due to a defect of soluble tyrosine aminotransferase. 6124575 1982
Entrez Id: 2332
Gene Symbol: FMR1
FMR1
0.400 AlteredExpression group BEFREE The fragile X syndrome (FRAXA) is the most widespread heritable form of mental retardation caused by the lack of expression of the fragile X mental retardation protein (FMRP). 18616611 2008